FastQCFastQC Report
Tue 23 Feb 2021
in2197_11_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamein2197_11_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10000000
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTCGGAATCTCGTA1852771.85277TruSeq Adapter, Index 21 (97% over 40bp)
TCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGTCGGAATCTCG647860.64786TruSeq Adapter, Index 21 (97% over 40bp)
CTGAGCCAACCTCCTGGCTGTCTATGCGACTCCACATCCTTTCCCACTTA238090.23809No Hit
CTGGGCTGTTTCCCTCTTGACAACGGACCTTATCACCCGCTGTCTGACTG167230.16723000000000002No Hit
CTCTCGTATTTAGCCTTGCCGGATGGTCCCGGCTGATTCAGACAGGATTT139570.13957No Hit
CTCTCGCTCACCTTAGGATTCTCTCCTCACCCATGTGTGTCCATTTTCGG103470.10346999999999999No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)